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Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… this “ data tsunami ,” as Kathy Yelick of the Computing Sciences Area at Lawrence Berkeley National Laboratory … to create pipelines, tools and other standardized data resources that the global research community can access and use … at the JGI and Berkeley Lab were developing specific programs to handle this scale of data. Part 2: Souped Up …
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Ben Bowen
… and integrating mathematics and chemistry for advanced analysis, modeling, and data integration. Dr. Bowen’s expertise in spectral … Ruebel, O., Northen, T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and … with the unknown: metabolomics and metabolite atlases. Journal of the American Society for Mass Spectrometry, 21, …
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Emiley Eloe-Fadrosh
… research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to … in human microbiome research at the Institute for Genome Sciences at the University of Maryland School of Medicine … the Metagenome Science Program on their research are encouraged to schedule time with Emiley Eloe-Fadrosh . Click to …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and the Innovative Genomics Institute.  The Science Researchers report the discovery of miniature … of thermostable Cas9 genes . The work also used resources at the National Energy Research Scientific Computing …
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How Filamentous Fungi Sense Food
… networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of … Filamentous fungi are also being used in the biotechnology industry to produce enzymes, proteins, and other … importantly, when faced with a veritable buffet of carbon sources, these fungi detect which complex chains are …
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Natural Prodcast
… chat”-style podcast about natural products and the science and scientists of secondary metabolism. Natural … to the chemicals that make species unique and different from one another. They are incredibly important to medicine, …
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Biases in genome reconstruction from metagenomic data
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Metabolomic, photoprotective, and photosynthetic acclimatory responses to post‐flowering drought in sorghum
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Soil metabolomics: Deciphering underground metabolic webs in terrestrial ecosystems
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IMG/M: the integrated metagenome data management and comparative analysis system
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IMG/M: integrated genome and metagenome comparative data analysis system
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