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Triggering Morel Fruiting
… the nutritional association between mycorrhizal fungi and tree roots as well. This might be one of the key … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific contribution? This session will demonstrate to …
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire genetic … explained. “That is definitely material that the scientific community now can use further. Let’s say somebody …
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JGI@25: Roots of a Mutualist Relationship
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … with the poplar, a JGI Flagship Genome and the first tree to have its genome sequenced. Having this first genome … poplar … Fungal Datasets … Genome Inside: THE Bioenergy Tree …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a … cell. Several years later, the continuing single cell sequencing collaboration between the JGI and Bigelow Lab led … to nearly 30 major previously uncharted branches of the tree of life. Used in tandem over the years, metagenomics …
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Strain Engineering
The focus of this group, in recent years, has been to bring … The developed strains represent an additional phase of user-accessible project types, in which DNA-based … chromosomally integrated into a taxonomically diverse suite of microbial chassis strains for elevated opportunity for …
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Pinning Down a Piece of Photosynthesis
… domain of unknown function.  First, they looked across the tree of life, doing a very complex CTRL+F search for this … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired … Mentors: Igor Grigoriev and Asaf Salamov, Fungal and Algal Program What effect has your summer internship with … to get a single line of code working and get the desired final output. Being successful in my computational efforts …
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Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov.
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… industry, and government organizations for three days of scientific presentation, interactive panel discussions, …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … over 1,000 metagenomes and established standardized sequencing protocols so that researchers could compare … was also generated. The 3.8 trillion bases or Terabases of sequencing data, along with geochemical and geospatial …
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Plant-Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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