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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… extremophile protists from a hypersaline alkaline lake in California. Sandra Hernandez Gonzalez : Out of this …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… and Liability Act (CERCLA) was enacted by Congress in 1980 for Superfund sites which are hazardous waste areas that … to bioremediation efforts for decades. Identifying resident microbes that can help bioremediate toxic substances has led … the ERD process.  … The work (proposal:  10.46936/10.25585/60000717 ) conducted by the U.S. Department of Energy …
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes to … has identified the major metabolic roles of constituent microbes, publishing their findings in the  Proceedings of …
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How to Target a Microbial Needle within a Community Haystack
… for capturing the genetic make-up of specific uncultivated microbes from complex environmental samples. The Science A … to first target cells from communities of uncultivated microbes, and then efficiently retrieve and characterize … and single-cell genomics, the vast majority of microbes that play key roles in global biogeochemical cycles …
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Building Sphagnum Genomic Resources
… cycling is a carbon flux regulator since sulfate-reducing microbes prevent methane production by routing the carbon … Fund (FWF, P23117-B17, P25111-B22, P26392-B20, and I1628-B22), the JGI (CSP 605), the German Research Foundation … Union (FP7-People-2013-CIG, Grant No PCIG14-GA-2013-630188 and Marie Skłodowska-Curie Grant No 660280), and the …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… easily in the lab. To access the genomes of uncultured  microbes , scientists usually employ two different methods; … Amplification (PTA) yields a much higher completion, above 80% in most cases. The Impact PTA is a refined capability … genomes from water and soil communities were at least 80% complete when studied with PTA, compared to <30% …
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New Research Sheds Light on Diversity in the Deep Sea
… funded by the US-National Science Foundation grants OCE-0728391, OCE-0937404, OCE-1558795 to A-L.R, and OCE-2049478 and DBI-2047598 to K.A. We thank the Department of Energy …
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SIPs with Standards
… microbial communities. These experiments can show which microbes are handling specific nutrients, or what they're …
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The More the Merrier: Making the Case for Plant Pan-genomes
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Introducing New Members of the JGI User Executive Committee
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What Happens To a Rainforest When You Dial Up Drought?
… store a big fraction of all the carbon on Earth, and soil microbes play a key role in pulling that carbon out of the …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… ( IMG/M ) portal. As part of a comparative analysis, 824 new GEBA-Actino genome sequences were combined with … samples in a previous study. The team analyzed over 80,000 biosynthetic gene clusters (BGCs) for synthesis of … approaches applied to relatively tractable samples like lakes and rivers could help fill in the gaps,” she added. …
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