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Cynipid wasps systematically reprogram host metabolism and restructure cell walls in developing galls
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Building Sphagnum Genomic Resources
… model system focused on carbon cycling studies, rather than for food or fuel applications. The Impact Sphagnum’s impact … species that occupy different microhabitats – Sphagnum fallax and S. magellanicum. The draft genome for  S. fallax is already available on the  JGI plant portal Phytozome , and the S. …
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Data Ecosystem
… to both expertise and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development of tools and infrastructure for microbiome data science, and the development of new … Research Scientific Computing Center … DOE System Biology Knowledgebase … National Microbiome Data Collaborative …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent … metabolic process these little makers rely on to survive. Now, new research enabled by the U.S. Department of Energy … careful,” Hatzenpichler explained. “Not only do you not know in which direction the enzyme these genes encode are …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… between fungal guilds, genes and function. If a tree falls in the forest — whether or not anyone registers the … much more information about fungi in these environments. “Now with these new tools — metatranscriptomics, RNA … samples to JGI,” Grigoriev said. All of these genomes are available at  MycoCosm . If initially, the task of mapping …
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Picking Up Threads of Cotton Genomics
… around two varieties: 95 percent of what is grown is known as Upland cotton ( Gossypium hirsutum ), while the … , both faculty investigators at the HudsonAlpha Institute for Biotechnology. “The goal has been for all this new … The genomes of all five cotton lineages and of cotton D are available for comparative analysis on JGI’s plant data …
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The Soil Blooms Green
Every fall, a mysterious green growth appears on top of farmers’ …
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Daniel Udwary
Dr. Udwary serves as a computational biologist for JGI’s Secondary Metabolites group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene … (2000) BS in Chemistry, SUNY Albany (1996) … List available on Google Scholar … Education … Publications …
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Natural Prodcast
JGI acts on its goals in — and builds out its capabilities for — secondary metabolism research, “Natural Prodcast” …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a … learning about how to write about and present her work. The now nine-week program requires all interns to build … excited — I’m always glad to pay it forward,” said Wint, now in her final year of PhD research at UC Merced. She …
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A Natural Mechanism Can Turbocharge Viral Evolution
… dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using … roles that they might play in the wild, hasn’t been clear. Now, to answer these questions, a team led by scientists at … Lab), has looked for DGRs in a broad range of publicly available datasets. They’ve discovered that DGRs are not …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated … A team led by researchers at the Max Planck Institute (MPI) for Marine Microbiology has developed, tested and deployed a … helps researchers develop technology that can then be made available to JGI users in order to address pressing energy …
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