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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, … the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing …
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is … their gene expression, the team then sequenced community genomes and expressed gene transcripts (metagenomes, … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy Spencer Chair in Genomics at the … Grimwood heads the Library Construction group for the JGI Plant Program . Her collaborations with the JGI began … she has continued to contribute across JGI plant genomes. She has appeared on the annual Highly Cited …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, they also …
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Mapping N-Linked Glycosylation Sites in the Secretome and Whole Cells of Aspergillus niger Using Hydrazide Chemistry and Mass Spectrometry
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Webinars on Offerings & Capabilities
Below are a list of webinars that can help you through the submission process by better understanding the capabilities and resources available for your … when applying to the FICUS call. (Feb. 21, 2024) More JGI webinars below …
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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple fungal … lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  … 4. Q:  Any advice on normalizing metabolomic data from a whole microbial community, without having cell counts or … Q:  Do you offer any training opportunities for those of us looking to get into metabolomic analyses? A:  Not currently, …
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy … and implementation of strategic initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max … for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic …
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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics … designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
New 5-year strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to … environmental systems.”  The user facility’s new plan goes beyond outlining a broad vision and multiple scientific, … of DOE resources. This approach, combining a forward-looking vision with a detailed implementation path, has …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings together established and emerging scientists from … discussions, workshops, and informal networking events. JGI will present both a genome center talk and a tech talk. …
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