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Large-scale contamination of microbial isolate genomes by Illumina PhiX control
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The integrated microbial genomes system: an expanding comparative analysis resource
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Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream
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JGIota: The Algae Nicknamed ‘Chlamy’
… This shorter episode is about a tiny, single-celled alga – Chlamydomonas reinhardtii – that’s managed to have a big impact. UC Berkeley plant … works on this alga, how researchers managed to sequence its genome, and what it has to teach us about other organisms – …
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Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships.
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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A Grass Model to Help Improve Giant Miscanthus
… of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … Miscanthus sinensis has been published. Analysis of the genome sequence also provides insights into how the multiple chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights into the dynamics of gene …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the … genomes, particularly from incredibly complex soil microbial communities, is crucial to understanding how these … from soil samples, researchers were able to reconstruct 79 minimally contaminated (<5%) draft genomes to >70% …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Taking a conservative approach, we were able to assemble ~75% of the Olpidium genome and retrieve ~300 markers for … known fossil record of land plants and evolved in early microbial biocrust environments.     …
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Genomic Signatures for Sedimentary Microbial Utilization of Phytoplankton Detritus in a Fast-Flowing Estuary
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Ten Years of Maintaining and Expanding a Microbial Genome and Metagenome Analysis System
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