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Single Cell Research Group
Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of … highlights our skewed understanding of microbial metabolism towards a minority of cultivated bacteria, still persists to …
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Microbiome Data Science Team
… discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on … dark matter as well as the development of novel methods to enable large-scale comparative analysis, mining and … Nature   568(7753):505-510 Amann R. et al (2019) Toward unrestricted use of public genomic data. Science …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental ch allenges. Methane … methane-mitigation goals. One aim is identifying chemical compounds that could inhibit microbial methane production. …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and … soil carbon storage during simulated range shifts of plant-fungal symbionts … Elucidation of the gene regulatory …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. While … Ul-Hasan credits her JGI-UC Merced summer internship for helping lay the foundation for her graduate work. “Being a …
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Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems
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The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry
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CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
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A telomere-to-telomere genome assembly resource of Bipolaris sorokiniana, the fungal pathogen causing spot blotch and common root rot diseases in barley and wheat
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … probing (SIP) to assess metabolite turnover, DNA-SIP for helping identify active micro-organisms within complex … (MAGI) for functional annotation and identifying unknown compounds (Pactolus). … B.S in Biomedical Engineering, Johns …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… at the conference venue This inaugural event will bring together researchers across major ecosystems and disciplines who are developing and applying laboratory ecosystems to help transition microbiome science from largely …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges. Switchgrass … about a multi-year study his student conducted involving fungal rust pathogen resistance. Just as the common gardens …
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