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Dan Rokhsar
Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the computational … and Development after his research interests shifted from condensed matter physics to computational biology, … NY PhD in Physics, Cornell University, NY Postdoctoral scientist, IBM Watson Research Center, Yorktown Heights, NY …
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Synthesis
Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is … assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables users to validate hypotheses generated from mining genomic data by designing and assembling …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… in its environment, this alga reveals a remarkable ability to adapt to stress and rapid environmental changes. … Biology article highlights how one microalga collected from water on the ice surface handles such fluctuations. P. … increased nutrient uptake and decreased cell death.  Scientists then extracted RNA to analyze gene expression, to …
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Tanja Woyke Elected to American Academy of Microbiology
Congratulations to the JGI’s Tanja Woyke , who has been elected to the … is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The selection process for AAM Fellows is … to the roles they play in the environment. One example, published in Nature , applied single-cell sequencing to …
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An Automated Tool for Assessing Virus Data Quality
… and more virus sequences are being recovered and identified from environmental samples (metagenomes). However, the … virus sequences vary widely. In a previous effort, an international consortium recommended specific guidelines and … have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… wild populations for the first time. For years, Elizabeth (Toby) Kellogg and other researchers at the Danforth Plant … are genes out there that affect this phenotype.’”  Results from A “Massive Amount” of Sequencing  Seed dispersal is … and educators. HudsonAlpha has become a national and international leader in genetics and genomics research and …
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership role in enabling the frontiers of research related to DOE’s missions in bioenergy, carbon cycling and … Metabolites, and DNA Synthesis Science Programs and draw from the infrastructure of Genomic Technologies and Data …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… measurements of primary and secondary metabolites from plants, microorganisms, and environmental samples using … JGI Metabolomics Program , along with Jenny Mortimer, Director of Plant Systems Biology at the Joint BioEnergy … and up to 500 nonpolar metabolomic analyses.   Q:  Can a Scientist from India can apply for support? A: Anyone from …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse gas 20 … provided by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) … described above, and also led a separate study that is published in the same issue of Nature Microbiology . Their …
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Sequencing and functional validation of the JGI Brachypodium distachyon T‐DNA collection
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Science Programs
The JGI’s Science Programs offer support to users and their research efforts.  JGI scientists lend their expertise to enhance the scientific …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of … et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . 6(7):960-970. … Aristotle University of Thessaloniki (2017) The van Niel International Prize for Studies in Bacterial Systematics …
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