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A Collaboration to Improve Plant Genome Annotations Across Species
… works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement … of RNA molecules transcribed from all the genes within a cell or tissue at a specific time or under specific … Atlas and PPRD could help with understanding gene functional roles, but the experimental inconsistency makes …
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2025 NeLLi Symposium
Tree of Life and latest discoveries toward the evolution of cellular complexity and microbial symbiosis.  This is a … centered on how to capture, define, quantify, and functionally characterize microbial diversity. The Symposium … Immediately following the NeLLi Symposium, join us for a 1.5-day jamboree on November 6-7 focused on improving …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted … All breakout sessions, just enough context to get people thinking and tackling some of the issues. It was really … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like these …
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Axel Visel
… the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and … for large-scale in situ gene expression analysis in multicellular organisms. During his postdoctoral training at … tolerant CAM plants, Agave deserti and Agave tequilana. BMC Genomics  14, 563. May D, Blow MJ, Kaplan T, McCulley DJ, …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US … called crassulacean acid metabolism, or CAM — that’s C-A-M, for short — helps plants that have it lose less water in a … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Forming Scientific Connections and Building Community
… experiences and what they’ll take with them as they go forward in their careers.   Listed below are the interns, … “ Development of a multiplex genomic integration system for the selection of genes essential for specialized carbon utilization ” Jesica Calderon : …
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Integrative genomic mining for enzyme function to enable engineering of a non-natural biosynthetic pathway
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Functional and genomic diversity of methylotrophic Rhodocyclaceae: description of Methyloversatilis discipulorum sp. nov.
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The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible
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David Goodstein
… and semiconductor equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building … extensive structural mutation in the laboratory. The Plant Cell 35 (2), 644-672 A Sreedasyam et al., 2023. JGI Plant … Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom. …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… from the ACTIVE SITES Research Center (ACSI), the Centre for Water and Environmental Research (ZWU) of the University … range of topics related to structural biology, single cell and systems biology, omics, and big data science, … development to study active sites or single cells in their functional aqueous environment.  During the tours through …
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Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System
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