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Olpidium, The Key to the Origin of Terrestrial Fungi
Olpidium zoospores remained largely untouched until seven years later. In 2018, as members of the ZyGoLife consortium … to the sequencing effort by the JGI and ZyGoLife in recent years. With the much more extensive taxonomic and genetic … diversification events occurred approximately 650 million years ago, and that the first terrestrial fungi predate the …
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The More the Merrier: Making the Case for Plant Pan-genomes
… more than once, and these events took place a million years apart: the individual with a maternal  B. distachyon parent (D plastotype) some 1.4 million years ago (Mya), while the S plastotype was a more recent … anticipated with only minor gene loss even after a million years.” Reference genomes for  B. distachyon ,  B. stacei …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North … aquifer in 2007 to achieve this goal. In less than four years, parts of the shallow portions of the groundwater were … remain.  To identify the microbes involved in the early years of the biodegradation process, researchers collected …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… papers, including two Nature Plants publications, in five years, have come out of the JGI-supported project. “The JGI … of the DNA Synthesis Science Program by applying to the year-round Community Science Program Functional Genomics …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… outcome of the innovative research  being proposed by this year’s CSP investigators,” said Tanja Woyke, Deputy Director …
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Doubling Down on Known Protein Families
… but we knew the families,” Kyrpides said. Yet, “almost 20 years of metagenomic data and metagenomic analysis, and … of new protein families had started to plateau in recent years, perhaps suggesting that scientists had “captured” … getting more protein families,” Kyrpides said. “In a few years, as we keep on sequencing more metagenomes, some of …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… this way was challenging, according to Martin. “Twelve years ago, when we mapped the first sequenced RNA from the … Fungal Genomes project changed that. This is a multi-year project in collaboration with the JGI to sequence 1000 … After starting with about 200 fungal genomes, in just a few years, he said, the 1000 Fungal Genomes project, together …
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The Power of One, Amplified
… in, on, and around the planet remain unknown. In recent years, advances in sequencing technologies and bioinformatic … In these springs, temperatures can reach as high as 80°C (~190°F), yet microbes thrive here. The communities in this … diverse than those within more moderate ecosystems. A few years ago, a candidate bacterial lineage was identified from …
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Enlarging Windows into Understanding Gene Functions
ENCODE project known as FUNCODE. “We noticed a few years ago that there is no shortage of fungal genomes … functional interpretation is as tough as it has been 10 years ago,” he said. “We thought about reconstructing gene …
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Help from Citrus’ Bitter, Hardier Cousin
JGI’s Daniel Rokhsar, published over the last half-dozen years, on the ancestral origins of  Citrus sinensis , the …
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Jane Grimwood Named HudsonAlpha Genomics Chair
JGI was established to work on the Human Genome Project in 1997. She was a group lead at Stanford Human Genome Center … the simplest cotton genome ( Gossypium raimondii ) several years ago.   As well as the seminal Human Genome Project DOE …
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Waiting to Respire
… ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce … to gain and harness energy. As reported January 28, 2019 in Nature Communications , two research teams joined …
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