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Plant Pan-Genomics Comes of Age
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Effects of Polar Light Cycle on Microbial Food Web
… bacteria (phototrophs) in Antarctica’s Ace Lake defy the norm when it comes to nutrient cycling in polar … was separated from the Southern Ocean roughly 5-7,000 years ago and has been well-studied by many researchers for … Water samples from Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… may be akin to finding a single snowflake on a colored-in page of that book. Published online September 28, 2022, in … viruses is just the beginning. “I often say that just identifying a sequence as viral is not even half the story.” Neri … of efficient, automated approaches to analyze and classify sequence data at this scale is essential.”   …
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Meeting report: International soil virus conference 2024
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is …
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New and Improved: Eucalyptus Reference is Now Accessible
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Nick Everson
… tenure with Berkeley Lab, he served in the US Navy for 6 years as a submarine electrician and a financial analyst in …
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Clades of huge phages from across Earth’s ecosystems
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Plant Program
… by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting … climate and soil conditions around the globe to identify genes to improve our domesticated species.  The program …
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Virus Discoveries that Keep Getting Bigger
… of giant viruses. The Science In the last thirty years, in environments all over the world, scientists have …
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Enlarging Windows into Understanding Gene Functions
… Technologies Group. In an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first … Unique Capability DAP-seq allows researchers to identify all the sites where transcription factors bind quickly … ENCODE project known as FUNCODE. “We noticed a few years ago that there is no shortage of fungal genomes …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, …
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