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Dan Rokhsar
Program (2010-2019), and JGI Chief Informatics Officer (2013-2016). Dr. Rokhsar joined the faculty of University of …
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Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities
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Uncovering Novel Genomes from Earth’s Microbiomes
… can’t be sequenced using traditional approaches. Identifying and characterizing the planet’s microbial diversity is … archaea by 44%, is now available and  described November 9, 2020 in  Nature Biotechnology . Known as the GEM (Genomes … BGCs in  IMG/ABC (Atlas of Biosynthetic Gene Clusters) by 31%. ( Listen to this JGI Natural Prodcast episode on genome …
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A Collaboration to Improve Plant Genome Annotations Across Species
Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research groups. The team … Having a better handle on the gene function helps identify the molecular targets for plant improvement. … to standardize the experimental protocols. Then, in 2020, seven more groups joined the project to contribute to …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Tara Oceans Expeditions that took place between 2009 and 2013, the  Chaetoceros genus has been identified as the most … as he had an accepted new investigator proposal last year, and he noted that the experience proved beneficial for …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… comprehensive learning experience.” Over the course of the year, she and other JGI staff conducted several real-time, … publication in a reputable scientific journal. It was gratifying to see the empowerment displayed across each of their … considers the experience the highlight of her past year’s work at the JGI. As the students look forward to …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… “Being a JGI-UC Merced Intern during the summer of my first year as a Ph.D. student significantly, and positively, … 20 UC Merced students have contributed to the research of 13 JGI scientists through the JGI-UC Merced Genomics …
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10 From JGI on the 2019 Highly Cited Researchers List
… papers published and cited between 2008-2018.” Less than 6,300 Highly Cited science and social science researchers in … were involved in that were reported on over the last year: Kerrie Barry and Jeremy Schmutz worked with a … to sequence, annotate and analyze the genomes of more than 300 Aspergillus Go here to learn more about the project. …
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… swapped for the heavier, non-radioactive isotope Carbon-13, researchers can then safely follow the path of that … to analyze samples from one experiment. Starting a  few years ago, researchers can request quantitative SIP analysis … and Reusability) for data reuse.  In the last year, JGI’s user community has helped propel multiple …
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John Vogel
… served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of … Science, Department of Plant Biology … Scarlett, et. al. 2023 Multiple origins, one evolutionary trajectory: gradual … no. iyac146 DOI: 10.1093/genetics/iyac146 Gordon, et. al. 2020 Gradual polyploid genome evolution revealed by a …
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Matt Blow
Genomes from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. 2022. DNA Methylation in  … Symbiosis with  Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et al. 2021. Persistence and plasticity in … of bacterial genes of unknown function. Nature 557:503-509. Blow et al 2016. The Epigenomic Landscape of …
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