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DNA Synthesis Science User Advisory Committee
… scientific relevance and quality. The Committee does not perform management functions nor do they direct the Programs’ …
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Meeting Code of Conduct
… to the following Code of Conduct. Event organizers will enforce this Code throughout the entire event. All … participate to help us create safe and positive experiences for everyone. We are dedicated to providing a harassment-free environment for everyone. We do not tolerate the harassment of …
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Informatics Advisory Committee
The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The … on the effective management and strategic objectives for the JGI’s data science, informatics and information technology (IT) activities and …
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Prokaryote Program User Advisory Committee
… scientific relevance and quality. The Committee does not perform management functions nor does it direct the Programs’ …
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Fungal Friends or Foes in Plant Roots
… health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. Summary A plant is … lobby. People walking into the lobby have many reasons for being there, but they’re not always immediately …
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Science Programs
Programs offer support to users and their research efforts.  JGI scientists lend their expertise to enhance the … impact of user projects, develop cutting edge approaches for and with users, and create computational tools and resources for them. Their concerted efforts help maximize …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US … called crassulacean acid metabolism, or CAM — that’s C-A-M, for short — helps plants that have it lose less water in a … We all know plants take up water through their roots. But for them to be able to pull that water through the whole …
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Gut Fungi: Unexpected Source of Novel Chemicals
… — an energetically expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the … of four anaerobic fungal species has revealed, for the first time, that this group is unexpectedly powerful: they … the JGI-EMSL Collaborative Science Initiative and used resources at the DOE Joint Genome Institute and the …
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I-Min (Amy) Chen
… of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. Chen is currently the Microbiome Computational Resource Lead at the JGI, responsible for the data … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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Streamlining Regulon Identification in Bacteria
… regulation is critical to ensuring genes vital for growth and survival across various environments are … genes associated with a given transcription factor is resource-intensive and unscalable. To test the efficacy of … which Mouncey leads. RIViT-seq is a three-step process. The first step is the in vitro transcription assay. The second …
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An Automated Tool for Assessing Virus Data Quality
… virus sequences vary widely. In a previous effort, an international consortium recommended specific … story of the blind men who encounter an elephant for the first time. Based on the single body part each blind man … step, numerous genes for antibiotic resistance and secondary metabolism would have been incorrectly attributed …
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A Plant Root Atlas for Tracking Developmental Trajectories
… in the journal  Developmental Cell and provides a community resource that could help researchers track cell development … capabilities for DOE mission questions. One of the  first papers ever applying single-transcriptomics to plant … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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