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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for students and … involving academic faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User … and discovery environment designed for reproducible computational biology analysis. KBase also supports  …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and … shared their thoughts on the students’ efforts. Ben Cole, a project scientist in Visel’s Genomics of Plant-Microbial … venomous hosts. She also facilitates the non-profit science communication and education organization The Biota Project …
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Game On: High School Students Drive Everglades Metagenomics Study
… attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the Florida Everglades to … email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy (DOE) … The class discovered Actinobacteria, Acidobacteria, and Proteobacteria to be the most common phyla of bacteria …
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Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Phytozome and will be available for future single-cell projects.” The Berkeley Lab  Biosciences Area has been …
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CO2 response screen in grass Brachypodium reveals the key role of a MAP kinase in CO2-triggered stomatal closure
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Metabolomics
… strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that … this identification, metabolomics enables functional genome annotation, improves understanding of the role small … chromatography mass spectrometry (LC-MS) based methods in combination with advanced computational analysis.   Overview …
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Functional plasticity of HCO3 – uptake and CO2 fixation in Cupriavidus necator H16
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” … parents or duplication, also known as “polyploidy,” is common among flowering plants; at least once during their … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … may tune gene expression; and investigate corresponding proteins. PhycoCosm’s built-in connection to the DOE Systems …
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JGI announces 2023 CSP Functional Genomics awardees
… research from potential users who need help translating genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the six researchers …
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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop … Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence data. …
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