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I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her … research has been focused on semantic and object-oriented data modeling, and biological data management. She was one … developed at Berkeley Lab. Dr. Chen is currently the Microbiome Computational Resource Lead at the JGI, …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. … as a national user facility. He did this with aplomb, managing his dedicated “Ops Team” who dealt with leaky … before the event segued to remarks by the leadership of the DOE Office of Biological and Environmental Research: …
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Role of diversity-generating retroelements for regulatory pathway tuning in cyanobacteria
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … to improving crop yields and a better understanding of the roles viruses and their host microbes play in nutrient …
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The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
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Introducing New Members of the JGI User Executive Committee
… – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six other JGI users already serving on the UEC – go here … efforts with diversity, equity and inclusion in mind. Microbiome ecologist Shade became Director of Research at … in access, analysis and sharing of JGI-generated data. She is also interested in reaching and engaging with …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Community Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … Berkeley is interested in better characterizing the role endosymbiotic bacteria play on mating habits of …
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The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole
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Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have … For the past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining … LB et al. A thermostable Cas9 with increased lifetime in human plasma. Nat Commun. 2017 Nov 10;8(1):1424. doi: …
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New Research Sheds Light on Diversity in the Deep Sea
Microbial communities living near hydrothermal deep-sea vents hold vast potential for … and nitrogen metabolism, as well as those that play a role in carbon cycling. However, the high degree of … the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have … directly from samples sidesteps these challenges, since it doesn’t require this kind of lab culture. Beginning in the … substances from the environment, viruses could play a role. “If you want to do anything with a microbiome — you …
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