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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  … For example, with support from the  Exascale Computing Project , the JGI — along with the National Energy Research … ecologist and JGI user Trina McMahon has been sampling microbes at Lake Mendota, which borders the University of …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … in five years, have come out of the JGI-supported project. “The JGI DNA Synthesis Science Program has been … on thiolases, a superfamily of enzymes found only in microbes, which make carbon-carbon bonds. This ability is …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… planet’s microbial diversity is immense, yet much of it remains unknown. For more than a decade, researchers around the … of Bacteria and Archaea (GEBA) initiative. “This project has helped to define the current shape of the … in many fields. The team discovered that rampant horizontal gene transfer and frequent gene loss shape the …
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Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
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Frequently Asked Questions: Proposal Submission
… submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project types supported, sample/capacity limits, and … The CSP and FICUS calls are open to both domestic and international applicants from any institution type and at …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, … to pin down.  Photosynthesis appears to have a lot in common with a Rube Goldberg machine: surprising … — but the experts we were able to work with on this project to ask questions about structure and function,” …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, … The Impact In their existence as large, cosmopolitan, and complex parasites, giant viruses often infect microeukaryote …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … Computational Sieves to Filter Sequences There are more microbes on the planet than particles in a handful of dirt, … viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as DNA viruses, RNA viruses …
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Soil exchange rates of COS and CO18O differ with the diversity of microbial communities and their carbonic anhydrase enzymes
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The Science The … prey. The Impact This research provides a much more comprehensive understanding of how a fundamental mechanism … (DP150100244) and the Australian Antarctic Science program (project 4031). The work in the Hallam Lab was performed …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities … Linking lignin engineering to drought stress resilience: …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month … well as offices. These efforts dovetail into sustainability commitments for the wider Berkeley Lab. “We’re shifting now … now IGB-wide ZERO Waste Initiative began its most ambitious project yet: a special recycling program to recycle lab …
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