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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… reactions. For this article alone, more than 600 genomes (dubbed “GEBA-Actino”) were sequenced from DSMZ type-strain deposits. All of these genome sequences and the tools to compare them are available on the JGI’s Integrated … gene loss shape the BGC repertoire in most genomes. The BGC data will also soon be contained within the JGI’s Secondary …
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MycoCosm Tutorial
Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with interactive web-based tools for comparative genomics and community annotation. …
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between … and respond to changes in the environment. The Impact Dubbed “the” bioenergy tree, poplars are known for their … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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A Guide to Conquer the Biological Network Era Using Graph Theory
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Ken Chu
Ken leads the development and maintenance of analytical tools and user interface components for the IMG family of systems. …
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A Natural Mechanism Can Turbocharge Viral Evolution
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at Lawrence Berkeley National … has looked for DGRs in a broad range of publicly available datasets. They’ve discovered that DGRs are not only … level. Scientists might then harness them as molecular tools for research and industry applications. Summary In …
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Ian Blaby
… strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. …
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Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
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Tanja Woyke
Lead position in 2009 and assumed the Deputy Director of User Program position in 2021. In addition to her JGI … Merced's School of Natural Sciences since 2015. Prospective users with specific questions regarding their proposed … J (Senior Editor 2016-2021), Peer J (2015-2019), Scientific Data (2017-2019). Reviewer for major journals and funding …
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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