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Katherine Louie
… from diverse biological and environmental samples in support of user science.  Capabilities offered by the … nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and … custom software for integrating metabolomics with genomic data (MAGI) for functional annotation and identifying …
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Accelerating Metagenomics Discoveries with Deep Learning
… an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered … Resources Division (CRD), in order to create more useful tools for the bioinformatics community. Other work presented … National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation …
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Picking Up Threads of Cotton Genomics
D are available for comparative analysis on JGI’s plant data portal  Phytozome , which is a community repository and … means being selective in choosing which team to financially support, Jones added. “We must be careful who we ask to take … energy.gov/science/office-science . … Cotton on Phytozome Data Portal …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new … interactions to untangle. Fungi work in cooperation to support a forest, and species vary across Earth’s … RNA to understand gene expression, and developed new tools to map that soil RNA to fungal genomes.  The U.S. …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most … Research (BER) program to enable scientific discovery in support of the DOE mission. Fermentative metabolism occurs …
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Simon Roux
… include the development of novel computational tools to identify virus sequences, the design of new … host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts … in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université …
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Pinning Down a Piece of Photosynthesis
… or DRI for short.  A kaleidoscope of structure-function data To study DRI experimentally, Blaby-Haas, Grosjean and … Scientists at Stanford’s SSRL were able to provide crucial data supporting the presence of the zinc-mirror heme site — the …
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2025 NeLLi Symposium
Dartmouth University … Metagenomic and single-cell sequence data have provided a means to access novel microbial … approaches to assign functional “read out” to sequence data. Moving from cataloging microbial diversity to … … External Organizers … Jasmine Bunn , Administrative Support & NeLLi Symposium coordinator … Frequently Asked …
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Ian Blaby
… strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. …
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A Grass Model to Help Improve Giant Miscanthus
… genome for M. sinensis, and the associated genomic tools, allows Miscanthus to both inform and benefit from … as a source of renewable bioenergy. … This work was supported by the Energy Biosciences Institute and the DOE … of the tetraploid M. sacchariflorus whole genome sequence data was funded by the BBSRC Core Strategic Programme in …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… — and rumen microbes are no exception. Back in 2011, JGI-supported researchers published a paper in the journal … that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over … and … that was really the foundation for many of the tools that are available these days and that are widely used …
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Janey Lee
Janey provides support for custom single-cell user projects and projects …
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