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A microarray for assessing transcription from pelagic marine microbial taxa
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Discovery of enzymes for toluene synthesis from anoxic microbial communities
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of … their host indefinitely. Now, in studying a microbial mat from Cone Pool in Mono County, California, scientists have … virus had been infecting the cell. The team assembled 130 genomes from their sample — a small proportion of the …
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Understanding Wildfire Recovery, Starting in Soil
… return to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By … DNA and messenger RNA (mRNA) sequencing to identify those traits that have helped fungi, bacteria and viruses survive. … team of researchers collected soil samples from a wildfire that burned at the Colorado-Wyoming border, …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a scientific … build proteins. What Wint and her mentors discovered in the genomes helped to reinforce Charles Darwin’s “survival of … covering the entire kingdom of fungi. “The information from this project may also have a practical relevance with …
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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A More Intuitive Phytozome Interface
… plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become the … website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … BioMart data warehouse interfaces they have come to rely on from Phytozome, with a more intuitive interface, deployed on …
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Crops as Tough as World Cup Turf
… our warming world, we’ll need corn, sorghum and other crops to grow well in worse conditions: with more heat, less water … Guangchao Sun and Vladimir Torrres have looked into traits that could transfer from grasses into other crops.  One grass they studied just …
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Computationally Classifying Fungal Lifestyles
… class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant … enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have contributed toward … (green). (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, …
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Extreme Scale De Novo Metagenome Assembly
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Dispatches From JGI Interns
… Program invites undergraduate and graduate students to engage in real, impactful research projects with JGI mentors. In this episode, hear two interns from the 2021 cohort describe their deep dives into …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome … knowledge of viral diversity and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research … and evolutionary drivers of virus-host dynamics in soil microbial communities. …
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