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Microbial species and intraspecies units exist and are maintained by ecological cohesiveness coupled to high homologous recombination
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Rex Malmstrom
… at the Massachusetts Institute of Technology he developed a high throughput approach for isolating individual bacterial … genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … BONCAT-FACS.  Nature Comm 10(1) 1-10 Schulz, F. et al. 2018. Hidden diversity of soil giant viruses. Nature Comm . …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… (Berkeley Lab) took on the Open Green Genome Initiative in 2018 as part of its Community Science Program. The OGG has set out to generate high-quality genome assemblies and annotations for 35 species … The work conducted by the US Department of Energy Joint Genome Institute is supported by the Office of Science of …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… publication caps JGI pilot project with fledgling Florida high school scientists. The Florida Everglades evokes images … ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science … access nutrients easily from a variety of soils and has a high tolerance of extreme water conditions such as drought … collections from across the species range. With these high-quality reference genomes for P. hallii , researchers can …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the … its capacity to tackle metagenomes with low (40 genomes) to high (596 genomes) complexity. The environmental datasets … to >70% completeness. Of those 79 genomes, 26 were high-quality draft genomes with >90% completeness. These results, …
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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for … Primary Template-Directed Amplification (PTA) yields a much higher completion, above 80% in most cases. The Impact PTA … that is desirable in the microbiome field due to its high recovery of single-cell genomes. This is key to better …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex … now underway as part of the JGI Community Science Program (CSP), a critical factor in developing sugarcane as a … For the portion of the work conducted by the Joint Genome Institute and the Joint BioEnergy Institute, support …
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Cultivating Symbiotic Antarctic Microbes
… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … dependent on the other for required nutrients—is genome size. The obligate symbiont’s genome is often reduced … by the JGI. Transmission electron microscopy (TEM) provided high resolution images confirming the  Hrr. lacusprofundi  …
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The Melampsora americana Population on Salix purpurea in the Great Lakes Region Is Highly Diverse with a Contributory Influence of Clonality.
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Genome-wide functional screens enable the prediction of high activity CRISPR-Cas9 and -Cas12a guides in Yarrowia lipolytica
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