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… protists to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 fungal genomes in … MycoCosm portal. In 2018, he launched scale-up of algal genomics and PhycoCosm portal. Dr. Grigoriev engaged thousands … Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists.  Nature Genet. …

… like E. coli , and then being able to look using the metabolomics capabilities also at JGI — it’s really cool that it’s … send that to back to JGI and have them do untargeted metabolomics, which we can then using some tricks to try to … I’m joking about having a lot of data. It’s a lot of metabolomics data sets. So what have we learned? So one thing that …

… materials, rumen microbes and their enzymes are an optimal study subject that could lead to more sustainable energy … in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists to study microorganisms that can’t be cultured by analyzing and …

… in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State University … the chair of the JGI User Executive Committee, on how that study went from the lab to the classroom. …

… between microbial life and environment, and using metagenomics to study these complex natural systems. Microbial communities …

… automated aspects of a commonly-used process for studying microbial communities, with results published in … labor and improve results. Applying this method to the study of a particular fungi, researchers identified novel … and laborious process — as well as a key way scientists study microorganisms. Because microorganisms live in complex …

… given sigma factor are inferred. Prior to this most recent study, only 12 sigma factors and 200 genes (or 209 sigma … to 399. Two of the 11 sigma factors addressed in the study were found to control more than 100 genes, one of …

… to extreme environments, Marike Palmer and Brian Hedlund study organisms living in hot springs. Hear how their recent …

Meta-omics datasets show that CRISPR-Cas systems determine … but these symbiotic interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  Recently , …

… and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the environmental … a host – with 23,000 MAGs. Modeling A New Path for Metagenomics Researchers Building upon these resources, KBase, a …

Laboratory, contributed metagenomic sequencing to the study as well as  genome analysis, providing authors a more … Microbial Genomes & Microbiomes (IMG/M) portal. The study,  published in the  Microbiome journal, broadens our …