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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), … campuses with this being our largest and most successful one. It’s proven to be a really good model for us that we … program cofounder and Applied Math professor at UC Merced, noted that the part that was the most rewarding of all the …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … the University of Texas at Austin produced a high-quality reference sequence of the complex switchgrass genome. The …
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Eelgrass Proves to Be Much Younger Than We Thought
… years less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … populations. Summary Eelgrass is unique in that there are not many species able to occupy the regions where eelgrass … form of another species, so the scientists had to use the genome itself.   Approximately 67 million years ago, the …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
Researchers looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match … look at how this enzyme family evolved across 90 species. “One unique thing about this work was our focus on all the … as well as the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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DOE Metrics
… developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … PDF] Q3 – Report on new computational approaches for the annotation of genomic data. [Download PDF] Q4 – Report on a … or plant genomes. [Download PDF] End-of-year Goal – Develop one new computationally enabled approach to analyze complex …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of the chemicals they need to survive. To … it to usable organic compounds. However, no microbe works alone. Archaea, bacteria, and viruses all operate in concert …
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JGI@25: Building a Better Bean
… of the University of Georgia sequenced and analyzed the genome of the common bean. That work was published online … diversity makes it easier to genetically manipulate. One important improvement to the bean spawned from this … to have with a faster-cooking bean itself.” The original reference genome yielded what are now widely-used molecular …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
Functional Genomics (formerly DNA Synthesis) call, and he noted the data had driven his lab’s focus on guide RNA … the University of California, Davis. “The work with JGI was one of the first things we actually started doing when … the full library.   … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Refining the Process of Identifying Algae Biotechnology Candidates
… multiple institutions have sequenced and analyzed the genome of an alga that thrives in saltwater (halotolerant) … that the United States has the capacity to produce enough algal biomass to yield the equivalent of 10-27 … analysis effort for a more complete picture. The team annotated the algal genome and analyzed its metabolome to …
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10 From JGI on the 2019 Highly Cited Researchers List
Highly Cited science and social science researchers in one or more of 21 fields appear on the 2019 list. … a long-term project to sequence, annotate and analyze the genomes of more than 300 Aspergillus Go here to learn more … Institute for Biotechnology that worked on an updated reference genome for Theobroma cacao, the tree that produces …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… conducting early field studies related to her thesis on cone snails, UC Merced graduate student Sabah Ul-Hasan and … in her first microbial ecology paper in the journal PLoS One . “Puerto Nuevo is, historically, a fishing town and we … general) outside of mostly anecdotal information,” Ul-Hasan noted. “I spent a good portion of 2016 and all of 2017 …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone Health) and Leslie Mitchell (Neochromosome) have worked … the goal is to create an entirely human-generated yeast genome. …
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