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DOE Metrics
… , which includes Principal Investigators (PIs), Co-PIs, and collaborators. *Unique users are counted once, even though an individual may have several projects/roles. Sequencing Quarter Total Bases (Trillions) … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress …
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JGI on the 2020 Highly Cited Researchers List
… Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of these researchers were involved in, … , and  Jeremy Schmutz were part of a consortium that  released a very high quality reference genome sequence of green millet ( Setaria viridis ) in  …
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Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate
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SECONDARY WALL ASSOCIATED MYB1 is a positive regulator of secondary cell wall thickening in Brachypodium distachyon and is not found in the Brassicaceae
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Transcriptome analysis of Brachypodium during fungal pathogen infection reveals both shared and distinct defense responses with wheat
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Genome‐wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon
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CO2 response screen in grass Brachypodium reveals the key role of a MAP kinase in CO2-triggered stomatal closure
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate details of … Berkeley National Laboratory (Berkeley Lab), led the project. He explained that large language models—artificial … cluster data set through the JGI's Secondary Metabolite Collaboratory . In addition to the datasets generated by JGI …
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FICUS Overview
… and multidisciplinary nature of DOE mission science projects, this initiative aims to encourage innovative … and selection processes, making it difficult to propose projects that truly integrated the capabilities of more than … fundamental science experiments in ways they couldn’t with projects undertaken separately at individual user …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … Laboratory, have collaborated with global researchers on projects related to understanding how the interactions … workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups …
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Trent Northen
… through the Joint BioEnergy Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI … Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … Novak, V, et al. Reproducible growth of Brachypodium in EcoFAB 2.0 reveals that nitrogen form and …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … This means it contains more than two copies of the genome , which can have pronounced ecological and … These are primarily tetraploids (4X or four copies of the genome) and octoploids (8X or eight copies of the genome). …
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