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Building Sphagnum Genomic Resources
… researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different … – Sphagnum fallax and S. magellanicum. The draft genome for  S. fallax is already available on the  JGI plant … These resources would provide the research community with the ability to address questions such as sphagnum’s …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest time, … fields look like popcorn is literally growing on plants, with fluffy white bolls bursting out of the green pods in … darwinii are the others. All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in …
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Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly
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Metagenomic Sequencing of an In Vitro-Simulated Microbial Community
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High-resolution phylogenetic microbial community profiling
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Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
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How Filamentous Fungi Sense Food
… a job site for a task that requires a flathead screwdriver with a full toolbox including Phillips and specialty … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the direct binding sites of many transcription factors to better understand how nutrients are acquired and carbon is …
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A Step Toward Controlling Soybean Rust
… yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio … Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop better strategies to counter soybean rust disease. Soybean …
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A Complex Confection Decoded: Sugarcane Reference Genome
Sugarcane was the last major crop without a reference quality genome and now crop researchers can work toward advancing … accounts for 80% of global sugar production. A reference genome for the sugarcane cultivar R570 has been  published …
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JGI@25: Roots of a Mutualist Relationship
… energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was … journal Nature . The mushroom has a symbiotic relationship with the poplar, a JGI Flagship Genome and the first tree to have its genome sequenced. …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … a feedstock for biomass-based biofuel production. As seen with many commonly cultivated commercial crops such as … This means it contains more than two copies of the genome , which can have pronounced ecological and …
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I-Min (Amy) Chen
… for the data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in … IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, taxonomic, and …
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