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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… for the JGI-UC Merced Internship Program was brimming with excitement and determination as they came onsite. From … called Chlamydomonas reinhardtii. We’re using an attentive deep learning model called Tabnet in order to perform regression …
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Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance
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Natural Prodcast Episode 1: The Primer, Part 1
… metabolism – field, though, is real, and it’s a field with very real and truly amazing science with a long history, and that’s what we’re going to be … as we go on, so if you hear a topic you’d want us to dive deeper on, let me know! All right, so here we go. This is …
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A Bioinformatician's Guide to Metagenomics
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Behind the Paper: Hot Springs Metagenomics
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Nikos Kyrpides
… for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined … Inc. in Chicago, IL. He did his postdoctoral studies with Carl Woese at the University of Illinois at … Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome Data Science. His group is …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to … crops and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  Dothideomycetes …
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A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci
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Discovery of Novel Plant Interaction Determinants from the Genomes of 163 Root Nodule Bacteria
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Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples
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IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites
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Webinar: SIP technologies at EMSL and JGI
… EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with metabolites, Isotope Ratio Mass Spectrometry, NanoSIMS, … 1. Q(uestion): How much DNA is required for the JGI SIP metagenomics pipeline? A(nswer):  The more the better. We … so you’d need at least 2 micrograms in the sample to start with. 2. Q: What would a typical turnaround time be for data …
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