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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… be single bacterial cells, visible to the naked eye. The unusual size is notable because bacteria aren’t usually … explained. “This kind of discovery opens new questions about bacterial morphotypes that have never been studied … microorganisms. “We started this project under the JGI’s strategic thrust of inter-organismal interactions, because …
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An Integrated Dataset to Understand Ecosystem Interaction
… time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding … wildlife habitats and water-quality regulation. Focusing on the rhizosphere and interactions between the trees, … to conduct a wide variety of analyses that contribute to a sustainable bioeconomy. Summary The 27 samples studied by …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen microbes have the ability to break down hardy … hold clues to how humans could do the same on an industrial scale to produce biofuels . Since one of the … expanded into three other universities. You can learn more about how JGI data supports higher education in this JGIota …
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Improving the Cacao Genome and Phytozome
… exist without cocoa According to the  International Cocoa Organization (ICCO), global cocoa bean production in … annotation was developing a high quality node for cacao used for systemic orthology to enable use for both cacao functional biology and breeding.     …
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Examples: Successful LOIs & Submissions
… Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared with … insights in lignin biosynthetic pathway edited populus … of simplified soil communities with high and low carbon use efficiency across differing moisture treatments …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … synthesis of secondary metabolites, in line with the JGI’s strategic initiatives. These specialized compounds enable … information as well as of important descriptive metadata about each strain. “This has been a very fruitful …
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Mike Sneddon
… bioinformatics pipelines and a laboratory information management (LIMS) system. He previously led the NGS Software team and metagenomic data platform … discovery platform. WO2021163637A1 , PCT application PCT/US2021/018050 (published 2021). Arkin, AP, et al. KBase: The …
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Building Sphagnum Genomic Resources
… resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for food or fuel … is estimated to be larger than any other single plant genus. Peatlands accumulate partially decomposed matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high …
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Advances and challenges in understanding evolution through genome comparison: meeting report of the European Molecular Biology Organization (EMBO) lecture course “Evolutionary and Comparative Genomics”
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  … Biology .  Watch this webinar hosted by EMSL to learn more about BioSANS. Letters of Intent are due March 17, 2021 for … also welcome to apply to the FICUS program. Find out more about the FICUS program at:  jgi.doe.gov/user-programs . Q:  …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… lineages. The Science From the distinct smell of eucalyptus to the flavor of wine, terpenes are ubiquitous. A diverse … by E. globulus . Occurring in clusters or duplicate arrays, these genes are prone to rapid genetic expansion which … against those of E. grandis to find differences in genome organization between the two species. The work was reported …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… for Audio   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two … meetings were still a thing, i.e. in January. She talked about her  Community Science Project proposal with JGI, in … that’s an example of a yucca species. And the cool thing about yuccas is that there are closely related species that …
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