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Biogeography and organic matter removal shape long-term effects of timber harvesting on forest soil microbial communities
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Water aging and the quality of organic carbon sources drive niche partitioning of the active bathypelagic prokaryotic microbiome
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JGI Welcomes New UEC Members
The JGI User Executive Committee (UEC) represents the JGI user … JGI offers, as well as proposal review procedures and the organization of the JGI Annual Meeting. Any investigator who … who represent the scientific areas of plant genomics, DNA synthesis and metabolomics, respectively. To …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… carbon and cycle key nutrients like nitrogen and phosphorus.  This way, the fungi of forest soils hold keys to tree … fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved … give researchers a way to access much more information about fungi in these environments. “Now with these new tools …
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Picking Up Threads of Cotton Genomics
… of the five major lineages of cotton;  G. tomentosum ,  G. mustelinum , and  G. darwinii are the others. All of these … is one such example.” Jones noted that he talks to growers about Cotton Inc.’s long-term investment in crop research. … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… from plants, microorganisms, and environmental samples using targeted and untargeted approaches. The webinar … with metabolomics analysis.  Q: Can you give us an idea about the scale of an average study? How many samples are … information for funding by JGI? A: The JGI is not a funding organization. Rather, it makes its sequencing, synthesis, …
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Evolution of a Fungal Gene Expression Regulator
… the genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in transposons, which may … the need for a more comprehensive exploration of genomic DNA modifications (epigenome).  In  Nature Ecology & … methyltransferase (MTase) variants. Using new sequencing technologies for producing both reference genomes and …
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Training the Next Generation of Talent
Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus at the … in the DOE JGI/University of California, Merced Genomics Distinguished Graduate Internship Program. … and maintaining cells through the use of deep-sequencing technologies. The internship program was born out of a …
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Substrate-restricted methanogenesis and limited volatile organic compound degradation in highly diverse and heterogeneous municipal landfill microbial communities
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Scaling Up Existing Skill Sets
… experience working intermediately between academia and industry, which is something I didn’t even know existed before. … my Ph.D. What is/has been one of your favorite things about your JGI internship?  Doing the JGI internship has … from private industry. I really liked the fairly flat organizational structure, and found everyone to be welcoming …
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JGI Announces 2025 New Investigator Portfolio
… novel research projects from PIs who have not led any previously accepted proposals.  The New Investigator call , part … will investigate a diverse array of projects, including the genomic dynamics of biofuel-producing fungi, the effects of … November 2025 review. You can also find more information about the JGI’s  various proposal calls here. …
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Forming Scientific Connections and Building Community
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven … Watch the short video here to see what they had to say about their experiences and what they’ll take with them as … biosynthetic gene cluster annotation by leveraging a large genomic model ” Leonel Gonzalez : “It’s been great having …
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