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2022 Progress Report
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence Berkeley National Laboratory … Lab), is to become the leading integrative genome science user facility enabling researchers to solve the world’s …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors … Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s contributions as … tasks we assigned.”       Click here to watch a video about the Biotech Partner summer interns at the JGI. What …
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IMG/M: the integrated metagenome data management and comparative analysis system
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IMG/M: integrated genome and metagenome comparative data analysis system
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JGI@25: Fueling Investigation into Methane-Making Microbes
… down potential biomass sources in ways we are only just beginning to understand. A better understanding of rumen … around the world, encompassing 54 researchers from 14 organizations across nine countries. Learn more about the Hungate1000 work led by AgResearch collaborators …
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Computationally Classifying Fungal Lifestyles
… in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  … and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  Dothideomycetes could … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students … funded by a DOE training grant.  Building off the previous year’s project, undergraduate interns Tamyra Long and … the Oakland soccer club this summer.  Want to learn more about their experience? Watch the short video below:  Video …
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Understanding Wildfire Recovery, Starting in Soil
… forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way … from a wildfire that burned at the Colorado-Wyoming border, about a year after the fire. They sampled soil across a … look like a year after a fire. It also opens questions about what the soil microbiome looks like over longer times …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… CSP  New Investigator call for proposals.  Tips: Contact us with your questions ([email protected]) … your proposal idea with JGI staff to clarify key points about JGI’s capabilities, technical feasibility, and … The only requirements are that you stay under the 500-gigabase cap and that you don’t request outside of the …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … Using this workflow, the team combed through more than 5,000 data sets of RNA sequences (metatranscriptomes) … from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into many more samples and …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on … the world’s rivers and their microbial communities. He’s focusing on the Arkansas River and how microbes might be influencing its health.  He sat down with me to talk about his project, and riffed a bit on what it means in a …
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Microfabrication of a Chamber for High-Resolution, In Situ Imaging of the Whole Root for Plant–Microbe Interactions
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