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Frequently Asked Questions: Proposal Submission
… to work with Berkeley Lab, a process which can take 6 months or longer to obtain with no guarantee of approval. …
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Single Cell Research Group
… through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., Leahy S. C., Attwood G. T., Teh K. … and sequencing of rumen microbiome members from the Hungate1000 Collection.” Nat Biotechnol 36(4): 359-367 (2018). … of microbial single-cell sequencing. Nat Methods 14(11): 1045-1054 (2017). Schulz F., Yutin N., Ivanova N. N., Ortega …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is …
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Picking Up Threads of Cotton Genomics
… out of the green pods in every direction. There are 100 million families around the world whose livelihoods … these things take not five or eight years, but sometimes 10 or 15 years, because the technology develops over time.” …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… hills, and it has legacy mining that goes back more than 100 years. And in particular, there’s an inflow from the … you know, within my lifetime, we should hit around nine or 10, which is thought to be where we’re going to level off. …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in … natural products. Nat Rev Microbiol. 2021 Nov;19(11):683. Mouncey NJ, Otani H, Udwary D, Yoshikuni Y. New voyages … product galaxy. J Ind Microbiol Biotechnol. 2019 Mar;46(3-4):273-279.   Otani, H., Stogios, P.J, Xu, X., Nocek, …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… You’d go find the cash converter box, feed it a $1, $5 or $10 bill and receive a set amount of tokens, commensurate in … not covered by reference genomes.”  Most of the more than 600 billion base pairs (Gigabases or Gbp) of genetic data … data used to train GenomeOcean encompasses approximately 645.4 Gbp of high-quality contigs from diverse sources, …
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VEGA Symposium
… & Postdocs – $200 Regular Rates (begin September 19, 2026) General & Berkeley Lab Attendee – $300 Students & … (VEGA) symposium will take place November 18-19, 2026 on the UC Berkeley campus. Organized every two years since … VEGA 26 will take place at the UC Berkeley MLK Building, in the …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… crop and its microbiome. For three consecutive years (2016-2018), researchers conducted large-scale experiments in … site and then collect and process the samples starting at 10am Pacific time. JGI researchers helped develop the … datasets. The results from the first year showed that 10,727 genes or 44% of expressed genes respond to drought …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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An Integrated Dataset to Understand Ecosystem Interaction
… back to the first complete genome of a poplar tree in 2006. … contract DE-AC05-00OR22725. The work ( https://doi.org/10.46936/10.25585/60000017 ) conducted by the U.S. …
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