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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Hiroshi Otani
… bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005.  Otani H, Udwary DW, Mouncey NJ. … pangenomic analysis of the genus Streptomyces. Sci Rep. 2022 Nov 7;12(1):18909. Otani H, Mouncey NJ. RIViT-seq … microbial natural products. Nat Rev Microbiol. 2021 Nov;19(11):683. Mouncey NJ, Otani H, Udwary D, Yoshikuni Y. New …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April … hills, and it has legacy mining that goes back more than 100 years. And in particular, there’s an inflow from the … you know, within my lifetime, we should hit around nine or 10, which is thought to be where we’re going to level off. …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… site and then collect and process the samples starting at 10am Pacific time. JGI researchers helped develop the … supported by the Office of Science of the DOE Contract DE-AC02-05CH11231. D.P. is supported in part by the Berkeley Fellowship …
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A Collaboration to Improve Plant Genome Annotations Across Species
Avinash: In the initial planning phase, there were about 10 groups that came together to standardize the experimental protocols. Then, in 2020, seven more groups joined the project to contribute to …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… switchgrass ( Panicum virgatum ), which has established 10 experimental gardens located in eight states spread across 1,100 miles. Switchgrass is a perennial grass that quickly … from half of the United States. As  reported January 27, 2021 in  Nature , the team led by researchers at the …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… for a SIP-focused workshop at the JGI in the fall of 2024. “ We wanted to get into the nitty gritty with the …
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Frequently Asked Questions: Project Management
… following sites: Microbes: IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   … Fungi: Mycocosm (citation: https://doi.org/10.1093/nar/gkt1183 ) Algae: Phycocosm (citation: …
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Trent Northen
… and starvation modulate root exudation. Science Advances, 2024 10(1), Schadt, C., Martin, S., Carrell, A. et al. An … across genotypes and environments. 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  …
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Natural Prodcast Episode 1: The Primer, Part 1
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2025 NeLLi Symposium
Nevada, Las Vegas, and the Desert Research Institute, the 2025 NeLLi Symposium delves into the most recent expansions … note that the cancellation policy below is as follows:  100% Refund upon request prior to 08/31/2025 50% Refund upon request prior to 10/31/2025 No refunds will be permitted after 10/31/2025 … …
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Tanja Woyke
… assumed the Deputy Director of User Program position in 2021. In addition to her JGI appointment, she also holds an … components. Science 356, 82-85. Tsementzi et al. 2016. SAR11 bacteria linked to ocean anoxia and nitrogen loss. Nature … chemoautotrophic symbiont genome. Science 315, 998-1000. Woyke et al. 2006. Symbiosis insights through …
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