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Ian Blaby
… biology and functional genomics. Prior to joining the JGI, he was a group lead at Brookhaven National Laboratory … in cyanobacteria Nature Communications 15(1) 3167. 2024 Simirenko et al ., gRNA-SeqRET: a universal tool for … Exploiting algal NADPH oxidase for biophotovoltaic energy. Plant biotechnology journal . 14: 1, 22-28. 2016 Blaby et. …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , … the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly known as liverwort, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Gut Fungi: Unexpected Source of Novel Chemicals
… compounds may also be involved in how the fungi metabolize plant biomass, which could inform how scientists can more … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … National Laboratory. The team’s research at both the JGI and EMSL was enabled by the Facilities Integrating …
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Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi
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Comparative Genomics and Transcriptomics Analyses Reveal Divergent Plant Biomass-Degrading Strategies in Fungi
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Protocols
Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols can be found here . DNA Extraction …
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Tanja Woyke
… of User Program position in 2021. In addition to her JGI appointment, she also holds an Adjunct Scientist … provides direction, leadership and oversight for all of the JGI user programs, including the Community Science Program …
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MGM Workshop at Fisabio Summer School 2025
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … species to answer questions about how they break down plant materials, which could be useful for industrial …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … Boston University ( magna cum laude ) … Serrano et al. 2024.  Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … relative of the candidate bioenergy crop switchgrass and a JGI Flagship Plant. All three  Brachypodium  grasses have …
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User Executive Committee
The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their …
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