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Gut Fungi: Unexpected Source of Novel Chemicals
… poop make surprisingly complex compounds — an energetically expensive feat thought to be too costly for them. The … which die in the presence of oxygen, dwell in herbivore guts and help them digest their last leafy meal. In their … californiae , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department …
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JGIota: Looking Back at Methane-Making Microbes
… We count on livestock for food and fiber, but raising these animals also produces an atmosphere-warming … gas: methane. Those emissions mainly come from gut microbes — the bacteria and archaea breaking down plant matter. So since 2010, the JGI has supported researchers studying those …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets with the … MetaHipMer2. Oak Ridge National Lab is home to two supercomputers — Summit and Frontier — that process terabytes of data … that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running smaller assemblies — …
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JGI@25: Stories from Intern Alumni
… science that will help solve energy and environmental challenges. Over the past 25 years, the JGI has hosted … From field research and wet lab experiments, to computational modeling and virtual projects, hear intern alumni …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions … did not. This is normally an arduous wet lab process. Typically, after incubating microbial communities with labeled … surrounding AMF’s long filaments, or hyphae. This region is called the hyphosphere. By studying its microbial …
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JGI@25: Studying Sorghum’s Survival Skills
… science that will help solve energy and environmental challenges. Sorghum stands out as a candidate feedstock for biofuels thanks to its … and thrive — some varieties grow their leafy stalks 16 to 18 feet into the air. Beyond being a staple grain …
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Green Algae Reveal One mRNA Encodes Many Proteins
… reinhardtii and Chromochloris zofingiensis . “I was scrutinizing the genes of one of our species of algae and kept … a little deeper, and realized what was really happening,” recalled Sean Gallaher, a research scientist in Sabeeha Merchant’s lab and first author of the article. The research team included scientists …
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Steven Wilson
… Since 2018, Mr. Wilson has served as the Systems Engineering Group … review, project and work order creation and management, automated sequence quality control and automation of microbial/metagenomic assemblies, portals that …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… have influenced their careers in science. Hear more about what they learned from working with their JGI mentors, what challenges they overcame, and what new skill sets they look … made me explore every single possibility. And also specifically, it sparked my interest in bioformatics, so that’s …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… of microbiome dynamics. Together, we will explore cutting-edge advancements in constructing, modeling, and … exchanging ideas, forming collaborations, and charting the future of microbiome science. Organizers The EcoFAB 2025 …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… expressing both male and female gametes in one individual. But some, including shrub willow  Salix purpurea , employ the … with multi-year generation times are young and haven’t physically differentiated. Understanding mechanisms of sex … flowering, which would enhance the biosafety of genetically engineered trees. Summary The shrub willow …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… of grass” that stretches some 580,000 square miles across southern Florida, they encompass a wide range of ecosystems … ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute … more about the microbial communities in the Arthur R. Marshall Loxahatchee National Wildlife Refuge, a 226-square mile …
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