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Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the … (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic … of Cell Identity as an R package … Education … Selected Publications … Software …

Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay Paropkari, … their work delivered during the 5th anniversary celebration of the internship program. Candace Cole, UC Merced JGI Mentors : Ben Cole & Axel Visel, Genomics of Plant-Microbial Interactions “The summer internship has …

Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, … technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …

Puerto Nuevo is a small town along the Baja California coastline in Mexico. … UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first … found informatics to be intimidating. That first exposure from great interactions with Dr. Ben Cole and Dr. Axel Visel …

Committee (UEC) recently welcomed three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of … and help develop programs to increase participation from minority-serving institutions in JGI user programs. The …

The United States  is the world’s leading soybean producer , and soybeans … causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce crop yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science …

My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) …

Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping … sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …

As set out in the JGI Five-Year Strategic Plan – “Beyond Basepairs, A Vision for Integrative … to further develop a more diverse and inclusive pool of talent for career opportunities at JGI and Berkeley Lab. …

This shorter episode is about a tiny, single-celled alga – Chlamydomonas reinhardtii – … in the Environmental Genomics & Systems Biology Division of the Berkeley Lab Biosciences Area.] …

A tall native plant of the North American prairie, switchgrass … Panicum virgatum ) has long been a tantalizing potential biofuel feedstock. But switchgrass has a complex genome and, …

Gene expression in eukaryotes was long held to be monocistronic – that is, a … a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous …