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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Hiroshi Otani
… Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly actinomycetes. His research activity is focused on developing and implementing new technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he studied …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper … 1,000 metagenomes and established standardized sequencing protocols so that researchers could compare results across … Science Program and the University of Colorado Anschutz’s Genomics Shared Resource. The work (proposal …
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Waiting to Respire
… to ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce … as a byproduct. The abundance of oxygen shaped the evolution of life on Earth, and led to the development of multicellular … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On March 17, 2020, a shelter-in-place order … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
… Biosciences Area Entrepreneurship Program presents… Eyes on the Prize – Launching & Sustaining Startups in Synthetic … 29th, 3:00 pm – 5:30 pm 3:00 pm – 4:15 pm: Panel discussion, Q&A followed by: 4:15 pm – 5:30 pm: Hosted Hoppy Hour @ … Creek Featuring a casual, candid, C-level panel discussion with local industry leaders: Arvind Gupta , Managing …
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A Step Toward Controlling Soybean Rust
… Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce crop yields by as much … Program portfolio , Sebastien Duplessis of the French National Institute for Agricultural Research (INRA)  proposed … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Green Algae Reveal One mRNA Encodes Many Proteins
… Gene expression in eukaryotes was long held to be monocistronic – that … a single gene makes messenger RNA, which encodes a single protein. Gene expression in eukaryotes was long held to be … a single gene makes messenger RNA, which encodes a single protein. Recently reported in the Proceedings of the National …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… The  National Ecological Observatory Network (NEON) is a network of … Q:  How would people find out about the NEON Sample Protocols? A:  Go to the  NEON website and click on the Data … into a data product, you can read more and download the protocol and guidelines. …
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A User-Centered Approach to Accessing JGI Data
… (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  Phytozome . Now … users to more easily access public data sets through a common set of metadata. For Steve Wilson, JGI’s Systems … as a baseline, we can allow a user to collect all of the ‘protein FASTA files’ more easily.” He also elaborated on the …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  Stephen … early 2020, people all over the world have been forced to confront the awesome power that viruses have to affect nearly … (including humans), grassland soils, even deep-sea hydrothermal vents – and computationally identifying which …
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