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… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … suite, as well as sequences from the Global Ocean Virome 2.0 dataset based on open ocean samples. CheckV identified a …

Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … Program (CSP 502951, 2016, Population and evolutionary genomics of host–microbiome interactions in Zostera marina …

WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing … Computing Facility (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … “JGI is one of the largest producers of environmental genomics data and has a strong reputation in the community,” …

… still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have … to keep processes running smoothly. As reported August 26, 2021, in Nature Communications , researchers led by Hal … Rapid Prototyping of Genes and Pathways” at the JGI Annual Genomics of Energy & Environment Meeting on September 1, …

… (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … List … of Cell Identity as an R package … Education … Selected Publications … Software …

Machine learning methods were applied on sequenced fungal … genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … (green). (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, …

Gene expression in eukaryotes was long held to be monocistronic – that is, a … a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …

In   April 2020, we mark both the 50th celebration of Earth Day on … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …

Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 … in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms …

All Berkeley Lab Employees and Affiliates. When: August 29th, 3:00 pm – 5:30 pm 3:00 pm – 4:15 pm: Panel discussion, … Johnston for followup questions.     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …

… causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce … as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , Sebastien … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …

Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … did not belong to the Euryarchaeota, the archaeal “superphylum” where this type of methanogenesis is typically …