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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
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The Case for Conservation
… with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a … comes from finally having an answer to the question, “Why bother keeping this?” For Stuart McDaniel’s lab at the … Pangea. McDaniel’s lab continues to work on the enigma of why the ancient moss sex chromosomes continue to evolve so …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… “autopolyploids”, genome duplication occurs within a single species. By contrast, “allopolyploids” arise when different … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is … clearly identifies the four subgenomes based on non-genic sequences.”  In his words, the history of the strawberry is …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… organisms who all consume different compounds. Microbial species will vary in activity as well; at any given time, many species in a community may be in ‘low power mode’, where … a  Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required …
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A 34K SNP genotyping array for Populus trichocarpa: Design, application to the study of natural populations and transferability to other Populus species
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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Polar Phytoplankton Need Zinc to Cope with the Cold
… collaboration, in 2017, they published the first genome sequence of a cold-adapted microalga: the diatom … study, they’ve cracked open the genome of another polar species, the green alga Microglena sp. YARC, which also … and gene regulation.  Mock and his team then linked those species-level observations with data on microalgal …
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Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria
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Reference genome sequence of the model plant Setaria
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Genome sequence of the model rice variety KitaakeX
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Genome Project Standards in a New Era of Sequencing
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Genome sequence of the model mushroom Schizophyllum commune
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