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Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California
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Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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Niche differentiation of bacteria and fungi in carbon and nitrogen cycling of different habitats in a temperate coniferous forest: A metaproteomic approach
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Horizontal gene transfer of the Mer operon is associated with large effects on the transcriptome and increased tolerance to mercury in nitrogen-fixing bacteria
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Frequently Asked Questions: Proposal Submission
… The deliverables can range from raw sequence data to well-annotated assembled genomes to … listing of approved proposals can be found here. All sequence data will be accessible on the JGI Data Portal. … How much will it cost me to sequence or synthesize my target or obtain metabolomics data? …
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Understanding Wildfire Recovery, Starting in Soil
… at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … which microbes in the soil persist after a wildfire — and why they thrive — gives forest managers more avenues to … builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful snapshot of what soils …
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A Genomic Perspective Across Earth’s Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy
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Fungal & Algal Program
… The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of … of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and … resource hub that provides access to publicly available sequenced algal genomes and genome annotations generated by …
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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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Synergistic interactions between anammox and dissimilatory nitrate reducing bacteria sustains reactor performance across variable nitrogen loading ratios
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Matt Blow
… genomic technologies and to understand genome function in bacteria. … al. 2024. scMicrobe PTA: Near Complete Genomes from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et … 3. Baumgart et al. 2021. Persistence and plasticity in bacterial gene regulation. Nature methods 18 (12), 1499-1505 …
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First Monoploid Reference Sequence of Sugarcane
… and their complex genomes are more difficult to sequence and assemble, in turn limiting the use of modern, … sets of chromosomes to produce a monoploid reference sequence. For the highly polyploid sugarcane, an … To create this reference sequence, the team relied on bacterial artificial chromosomes (BACs), vectors that can …
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