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Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities
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Rex Malmstrom
… bacterial group in the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he developed a high throughput approach for isolating individual bacterial cells and … His group also handles the Stable Isotope Probing (SIP) Metagenomics pipeline  that reveals in situ functional …
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A Natural Mechanism Can Turbocharge Viral Evolution
… how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The Science The first … to adapt to changing environments. It also sheds light on why the rapid injection of mutations in a particular gene … prevent viruses from successfully replicating, even if they managed to enter the host cell. DGRs could prove to be …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… of significant interest for their potential contributions to a sustainable bioeconomy, including, potentially, methane … to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the … by genome sequencing, which is a much less biased approach to studying nature. That’s the real power of …
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Protein structure determination using metagenome sequence data
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Hi-C metagenome sequencing reveals soil phage–host interactions
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… genomes of uncultivated giant viruses from environmental sequences across the globe, then using these sequences to … been co-cultivated with amoeba or with their hosts, though metagenomics is now making it possible to seek out and … for the first time. The current study applied a multi-step approach to mine, bin and then filter the data for the major …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Proposals aim to sequence and annotate genomes from Antarctica to Africa … of efforts to develop pangenomes for these species, this approach would also allow researchers to learn more about …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … of viruses impact many ecological processes, including carbon cycles. “Whether or not you planned it, viruses are … Along with highlighting the viruses in a given sample, metagenomics shed light on another key aspect of viruses in …
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane Metabolism. Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over … the microbes into small pools of cells that were then sequenced separately. From these samples, 111 …
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JGIota: Looking Back at Sequencing for Soybeans
So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into soybean’s strengths – along with a fungus that …
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Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloides
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