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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, … technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … is particularly interested in understanding how, when and why microbes decide to produce which metabolites. …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what …
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Neha Varghese
… Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Overview of the Genomes OnLine Database (GOLD)
… TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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Introduction: Sequences and consequences
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Targeted single‐cell sequencing
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JGIota: Sequencing Shiitakes with David Hibbett
… David Hibbett of Clark University fills us in on the kind of decay that makes shiitake mushrooms special. This week, …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a … and 2010. DNA was extracted from the samples that were sequenced by the U.S. Department of Energy (DOE) Joint … Science Program , they were able to analyze the resulting metagenomic data. (Data from the project are available on …
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Metagenomes in the Borderline Ecosystems of the Antarctic Cryptoendolithic Communities
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Extreme Scale De Novo Metagenome Assembly
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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