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What Happens To a Rainforest When You Dial Up Drought?
… Rainforests store a big fraction of all the carbon on Earth, … take a look at what happens to that storage when a rainforest hits a drought. Tag along with their experiments in …
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An Automated Tool for Assessing Virus Data Quality
… are being recovered and identified from environmental samples (metagenomes). However, the quality and completeness … of uncultivated viruses (from environmental metagenome samples) from IMG/VR , a database that is part of the … and guidelines for providing the minimum amount of information for an uncultivated virus genome. CheckV has …
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DAS Tool for Genome Reconstruction from Metagenomes
… genomes from sequences generated from environmental samples. The work aligns with the ETOP mission of providing … Reserve in California. Using DAS Tool on data from soil samples, researchers were able to reconstruct 79 minimally … assemble often-fragmentary DNA sequences from environmental samples of very complex microbial communities into complete …
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JGI on the 2020 Highly Cited Researchers List
… microbial draft genomes generated from environmental samples around the world. Much of the data had been generated from samples provided by more than 200 scientists and sequenced … The reference genome for  M. sinensis can both inform and benefit from breeding programs of related …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… messenger RNA sequences (transcriptomes) from their soil samples. This gene expression dataset was particularly … out these distractions. Combining genome and transcriptome information allowed the team to have a much more … remaining soil (further from the roots). The team collected samples from these habitats. The proteins in the samples …
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JGI on the 2021 Highly Cited Researchers List
… associate climate adaptations with switchgrass biology. The information could be useful toward the DOE’s interest in … research consortium that collected and analyzed microbial samples from public transit stations across 60 global … JGI database to investigate viruses detected in the samples. Simon Roux co-organized the Viral EcoGenomics & …
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Fishing for Novel Cellulose Degraders
… for its performance, and then applied it to environmental samples from the Great Boiling Spring Geothermal Field in … microorganisms of interest from complex environmental samples. …
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Ancient Algae Reveal Secrets of Plant Evolution
… helped plants thrive under challenging conditions could inform the development of resilient crop varieties able to …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… “This exercise helped us in filling or updating geographic information for nearly 1,100 samples,” said Reddy. Kaushal also reviewed and assigned … name and IDs for nearly 20,000 public/private mtagenome biosamples in GOLD. “Besides these, he curated several small …
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Accelerating Metagenomics Discoveries with Deep Learning
… data, or DNA sequencing data gathered from whole samples rather than single cells or isolated strains, is … (CRD), in order to create more useful tools for the bioinformatics community. Other work presented at the workshop … contigs (inferred chromosomal sequences in mixed-genome samples) with a new tool called MetaGNN (Prashant Pandey of …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… a combination of sequencing tools and techniques applied to samples collected from acidic iron-oxide microbial mats in … transcriptomes and single amplified genomes from samples collected from several locations to thoroughly characterize the archaeal lineage, information that they believe will lend insights into …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… University in Israel, the National Center for Biotechnology Information, and the U.S. Department of Energy (DOE) Joint … (metatranscriptomes) generated from diverse environmental samples around the world, resulting in a five-fold increase … the planet’s nutrient cycles. While most organism’s genetic information is encoded in DNA, with RNA delivering the …
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