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Igor Grigoriev
… of California, Berkeley. He contributed to the Human Genome Project and led annotation and analysis of diverse … Dr. Grigoriev engaged thousands of researchers in genome projects and organized numerous genomics workshops. … cylindrus.   Nature. 541(7638):536-540. Riley et al (2016) Comparative genomics of biotechnologically important …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National … Laboratory, have collaborated with global researchers on projects related to understanding how the interactions … specific database of IMG/VR (Viral Resources.) Launched in 2016, IMG/VR is the largest publicly available collection of …
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Coming-of-Age Characterization of Soil Viruses: A User’s Guide to Virus Isolation, Detection within Metagenomes, and Viromics
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Len Pennacchio
… more about the offerings and capabilities we offer JGI users to help advance their science. … Additional duties of this Deputy include interacting with users seeking to exploit new genomic technologies and … a vision for future technical JGI directions for DOE User science. …
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Enlarging Windows into Understanding Gene Functions
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that … species to answer questions about how they break down plant materials, which could be useful for industrial biofuel …
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2024 Progress Report
… Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, … in April 2024 — through serving an increased number of users with a record output of products, making data easier … A record number of primary users — 2,456 — had active proposals with us, along with …
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Game On: High School Students Drive Everglades Metagenomics Study
… attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the Florida Everglades to … Joint Genome Institute (JGI) , a DOE Office of Science User Facility. She took special interest in it because she … Everglades. The students had to come up with an extraction procedure for the soil and acquire the permits to do so. …
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A Multiomic Approach to Understand How Pleurotus eryngii Transforms Non-Woody Lignocellulosic Material
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Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Internship Program, first sampled the area in summer 2016.  She described the microbial diversity patterns of … information,” Ul-Hasan noted. “I spent a good portion of 2016 and all of 2017 looking for  C. californicus across the …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… run away, they’ve evolved these really tough cell wall materials that keep microbes — and the enzymes that would be produced by microorganisms — out,” said JGI user/collaborator Michelle O’Malley, a chemical and … into biochemical production.    Over time, as these projects have delivered results, they have also snowballed …
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Gamete expression of TALE class HD genes activates the diploid sporophyte program in Marchantia polymorpha
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