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Digging into Microbial Ecosystems Deep Underground
… viral infection may play in other natural ecosystems. The video complements a recently published paper with first …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted the … are strongly sorbed to the clays. Sandy soils are much more likely to work well for metabolomics.  Q:  What tool or … the water availability, temperature variations etc are all more extreme in the field. By having transcriptomics data …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Genome Initiative. Brassicales is represented by more than 4,700 species, and the proposal focuses on … of primary producers generating organic compounds through photosynthesis, but only a fraction have been sequenced.  … of the University of East Anglia was also approved to learn more about the roles of diatoms in carbon fixation and in …
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JGI Workshops at 33rd Fungal Genetics Conference
… Ahrendt presenting  Friday, March 20: JGI-EMSL Workshop: "Toward 10,000 Fungal Genomes and Phenotypes" …
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JGI Early Career Researchers Featured in mSystems Special Issue
… and Metagenome Program head Emiley Eloe-Fadrosh outline more targeted approaches to reconstruct individual microbes … genome assembly from metagenomes. This is a critical step toward better understanding the impact of viruses upon … some of the most pressing challenges of our time. For more information, please visit  …
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2024 Progress Report
… users — 2,456 — had active proposals with us, along with more than 15,000 secondary users who made use of our data. … a unique cyanobacterial protein and understand its role in photosynthesis. In collaboration with Berkeley Lab Computing Sciences and NERSC, JGI researchers  more than doubled the number of known protein families by …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… enzymes are an optimal study subject that could lead to more sustainable energy production.  However, less than 10% … These genes were identified based on their potential to efficiently degrade lignocellulose in cow rumen, essentially … since expanded into three other universities. You can learn more about how JGI data supports higher education in this …
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Fungal Friends or Foes in Plant Roots
… and fungi can form such symbiotic partnerships. To learn more about these other plant-fungal relationships, an … proposal led by INRAE’s Francis Martin that contributed toward filling gaps on the fungal Tree of Life through the … from ancestors that were likely harmful to plants and can efficiently colonize roots by degrading the plant cell wall …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… responsibly managing people and resources. “The plan looks toward exciting new directions in science, technology and … and objectives for the next five years. It also includes more than 130 implementation milestones to help track and … stewards of public resources, the JGI also aims to efficiently operate, effectively communicate the …
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JGI & KBase at PAG XXVII
… Plant Genomic Science on current and ongoing developments toward integrative biology. Researchers who are applying … Integrative Genomics Building (IGB). Click here to learn more about this move. …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… sequences. Using this workflow, the team combed through more than 5,000 data sets of RNA sequences … Computational Sieves to Filter Sequences There are more microbes on the planet than particles in a handful of … of sequences, and soon, with trillions. The development of efficient, automated approaches to analyze and classify …
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Crysten Blaby-Haas
… 22, 63. Davidi L, Gallaher SD, Ben-David E, Purvine SO, Fillmore TL, Nicora CD, Craig RJ, Schmollinger S, Roje S, …
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