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Improving the Cacao Genome and Phytozome
… fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s … and ensure there will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree … Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the plant team …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… UC Merced students and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was … one JGI mentor. Together, they work through a specific project that aligns with each intern’s interests or … in some cases daily, check-ins with their mentors to ensure projects progressed despite the challenges of remote work. …
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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of the … environments, while Corymbia are more abundant in the drier parts of Australia with lower quality soils and even in the … these genes are prone to rapid genetic expansion which partially explains the great variety of terpene products in …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … the Biosciences Area and among our Berkeley Lab colleagues, particularly with the other user facilities including the … NERSC and ESnet, as well as externally to prospective partners to generate awareness of and clarity about the …
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Nikos Kyrpides
… 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes … (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes … Joint Genome Institute, Dr. Kyrpides led the development of the genome analysis and Bioinformatics core at Integrated …
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Ancient Algae Reveal Secrets of Plant Evolution
… 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , scientists have enhanced our understanding of how early plants transitioned from water to land. Key … Summary Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE …
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JGI Announces 2023 Community Science Program Awardees
… Congratulations to the proposers of the 19 proposals selected for the 2023 Community Science Program call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … CSP Annual Call is focused on large-scale genomic science projects relevant to the DOE’s Office of Biological and …
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Sequencing Technologies & Products
… Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. This … An assay used for profiling transcription factor binding sites across entire … (multiDAP-seq) method allowing high-throughput processing of samples in 96-well plates on automated liquid handler …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using … zealexins. These genes were synthesized by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … Science Program . And the work is part of a  larger CSP Functional Genomics proposal to understand terpene  …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – … to Ray and most of the rest of the 200-plus Zoom participants. While the virtual mic shifted to Ray for his … at a high level as JGI transitioned from the Human Genome Project to gaining momentum as a national user facility. He …
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Picking Up Threads of Cotton Genomics
… growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … team including researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … for all this new cotton work, and even the original cotton project was to try to bring in molecular methods of breeding …
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