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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … Ivanova, senior author of the study and head of the JGI’s Microbiome Annotation Group. Many of these bacterial and … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Bioenergy sorghum’s deep roots: A key to sustainable biomass production on annual cropland
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Multilevel analysis between Physcomitrium patens and Mortierellaceae endophytes explores potential long‐standing interaction among land plants and fungi
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Applying Viral Genomics Expertise to Understanding the Human Virome
… viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … Human Virome Program .  Nikos Kyrpides , head of the JGI’s  Microbiome Data Science , leads one project with JGI … University. The CODCC aims to coordinate data acquisition, analysis, and visualization through a sustainable, …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … and environmental challenges. Viruses are everywhere — in soil, the sea and, of course, the cells of other organisms. … Group Lead at the JGI.  To understand the microbiome systems underpinning a broad range of environmental …
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute … how these changes affect the dynamics and functioning of ecosystems. She leads a recently approved CSP New Investigator … improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and used by …
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Frederik Schulz
… Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of … machine learning to find novel functions that may impact microbiome structure and biogeochemical cycles. He provides … ecological roles of microeukaryotes in terrestrial ecosystems. Additionally, Dr. Schulz is leading a DTRA-funded …
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You Can Move, But You Can’t Hide
… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  recently described in  Nature … that happen between tiny organisms (microbes) located in soils and water. MGEs like viruses and plasmids drive …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a perfect storm in … to have an index. You have to have the computer-searching systems. So one of the enabling technologies we wanted to do …
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Linking soil biology and chemistry in biological soil crust using isolate exometabolomics
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The initial soil microbiota impacts the potential for lignocellulose degradation during soil solarization
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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