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Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office …

With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of … pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, … reflecting factors such as the quality and number of datasets for human microbiome data. In other environments, …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … the need to have a limited and time-sensitive protection of certain types of data to support their use by those … this policy) produced through all user projects accepted FY22 and later through the Community Science Program (CSP), …

… microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific … designed for analysis of DNA and RNA sequence data.  … Datasets … BBTools …

… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. … of new viruses and plasmids quickly, even in massive datasets. geNomad employs two distinct approaches to … Science User Facilities operated under Contract No. DE-AC02-05CH11231. This work also received support from the …

In honor of the JGI's 25th anniversary in 2022, we have revisited a … Gb (gigabasepairs — most fungi are around 50 million Mb, or megabases, in size). So, the JGI helped a consortium of … on Phytozome … 3 P. pachyrhizi genomes on MycoCosm … Plant Datasets … Fungal Datasets …

Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The … genomes of symbiotic species available: 73 saprotrophs and 62 mycorrhizal species. The 62 mycorrhizal species include 29 … generated by the JGI more than a decade ago. Having these datasets will assist researchers in moving toward functional …

Over 40 percent of the cereal crop’s genes respond to drought stress. The … For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be a Flagship Plant. By … 400 root and leaf samples and helped analyze the sequencing datasets. The results from the first year showed that 10,727 …

In honor of the JGI's 25th anniversary in 2022, we have revisited a … use whole-genome shotgun sequencing to analyze the 730-megabase Sorghum bicolor (L.) Moench genome. Sorghum was the … on Phytozome … Learn more on the EPICON project … Plant Datasets … Also on Phytozome …

… and Mark Soghomonian share what it was like to take on one of these genomes.  …

… ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … dead cells recorded. Samples were taken again at two, six, 12 and 24 hours. By the 24-hour mark, these algae showed … No. DE-AC02-05CH11231. … P. psychrophila on PhycoCosm … Datasets …

… get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. … and metabolic potential of the communities studied. The datasets are available on the JGI’s  Integrated Microbial … funded by the US-National Science Foundation grants OCE-0728391, OCE-0937404, OCE-1558795 to A-L.R, and OCE-2049478 …