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Calculating the Costs of Multiple Switchgrass Gene Copies
… at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Where did the 8X variant come from? Did they arise multiple times or does their broad distribution indicate multiple, …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 proposals have been  … (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … through the  CSP New Investigator call . It is the first project to have successfully evolved into a full-scale …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in … one of the first students to participate in the DOE Joint Genome Institute (JGI)-UC Merced internship program, … . “There was a lot of freedom to explore,” he recalled. His project involved developing an algorithm and although the …
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Frederik Schulz
… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic … to the JGI user community and supports various user projects in the Microbial Program. In an LDRD-funded …
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Micro-Scale Applications Group
… The Micro-Scale Applications group explores the genetic makeup of natural microbial … technology in order to enhance the quality of single-cell genomes and directly link functional information with individual cells. Research Team    … internal analytical standards to accurately measure environmental microbiome activity levels.This functional assay …
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You Can Move, But You Can’t Hide
… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found … Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … can also affect ecosystems by killing other cells. Over time, MGEs can help microbes gain a competitive edge within …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for … involving academic faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User … genomics. Fungi can be better understood through reference genomes, but unfortunately there are not many available to …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating … if you’re a virus or a microbe with a DGR, you gamble every time you mutate. But, perhaps, it works to keep throwing the …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have … trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … engagement activities under the umbrella of the SOD Blitz Project. In hopes of controlling the spread of the disease, …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have … of those shared by both humans and flowering plants). Its genome also contains hundreds of genes uniquely associated … and published in the journal Science . At the time, the project was co-led by Daniel Rokhsar, head of the JGI’s …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce … a renowned science popularizer and communicator (and at one time, the spouse of Lynn Margulis). The information was then …
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Nigel Mouncey
… Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its … private sector, as well as research expertise in secondary metabolites and synthetic biology. Dr. Mouncey has a … and Leader at Dow AgroSciences in Indianapolis. During his time in industry, Dr. Mouncey directed R&D teams that …
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