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Webinar: PhycoCosm Tutorial
… about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis … trees are based upon? A: This is still work in progress as new genomes are being added. We do plan to publish the tree … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with … Generating these datasets opens up the possibility of new insights across ecosystems and research teams. Even … a  Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required …
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FICUS
… The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … request the capabilities and expertise of multiple DOE National User Facilities in one research proposal.  Successful applications will focus … from a researcher, briefly describing the project motivation, experimental design, capabilities to be used and DOE …
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User Executive Committee Charter
… (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their … including areas where more or less capacity is needed, new capabilities desired, or capabilities that could be …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look … before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last … “When we proposed to do the Mendota time series, we knew that it was going to be more samples and more data per …
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Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … higher-level classifications of virus groups (phyla.) The new sequences are filling in some gaps on existing virus … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month events throughout April. This year, a new group at the Lab, the Sustainable Garden Club, hosted a … Plant Sale. All year, the JGI helps support finding solutions to clean energy and environmental challenges. And many …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … under laboratory conditions, their genomes can’t be sequenced using traditional approaches. Identifying and … been associated with a host – with 23,000 MAGs. Modeling A New Path for Metagenomics Researchers Building upon these …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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JGI-USCCN Strain Sequencing Opportunity
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a … genomic resources that fostered the widespread adoption of Brachypodium distachyon as an experimental model for … on developing plant functional genomic resources (e.g. sequenced mutant collections, transformation technology, …
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