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Ian Blaby
… Exploiting algal NADPH oxidase for biophotovoltaic energy. Plant biotechnology journal . 14: 1, 22-28. 2016 Blaby et. … responses and overlap with other stress transcriptomes. The Plant Journal . 84: 5, 974-988. 2015 Zones et. al., … reveals continuous cell and metabolic differentiation. The Plant Cell . 27: 10, 2743-2769. 2015 Blaby et. al., The …
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Supercharging SIP in the Fungal Hyphosphere
… microorganisms live in complex communities, like within soils or the gut, they are difficult to study individually. … most widespread type of mycorrhizal fungi, live within a plant’s root system. They form mutually beneficial … means they offer a lot of insights into how plant materials can be broken down for things like biomass and  biofuels . …
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Leo Baumgart
… of JGI user science projects spanning bacteria, fungi, and plants. His team is also developing single-nuclei sequencing … regulation at the level of individual cells across diverse plant tissues. Dr. Baumgart focuses on expanding functional … "Recruitment, rewiring and deep conservation in flowering plant gene regulation." Nature Plants 11, no. 8 (2025): …
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A bacterial toolkit for plants
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JGI@25: Studying Sorghum’s Survival Skills
… and environmental challenges. Sorghum stands out as a candidate feedstock for biofuels thanks to its drought and … little water, full sunlight and hot temperatures, sorghum plants can photosynthesize and thrive — some varieties grow … & M and Great Lakes Bioenergy Research Center) and his team set out to compare different varieties of sorghum. …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of … to the  v13 BioMart data warehouse with filters preset to select that family. JBrowse, keyword search, and BLAST result links will NOT be forwarded. You can find the v13 JBrowsers corresponding to many of the v12 …
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2024 Progress Report
… increased capacities and faster sequencing, and at the same time help us manage costs. We have also scaled DNA-affinity … JGI at the forefront of environmental genomics and sets forth a five-year set of milestones to advance our capabilities, user service … consortium culminated in a reference for the complex  sugarcane genome sequence. The JGI  partnered  with synchrotron …
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Linking soil biology and chemistry in biological soil crust using isolate exometabolomics
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The initial soil microbiota impacts the potential for lignocellulose degradation during soil solarization
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Doubling Down on Known Protein Families
… the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now analyze new datasets by comparing against these … ‘Dark Matter’ Microbial communities living everywhere from soils and stomachs to the deep sea are capable of doing a …
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New Lineages of Life Group
… to extract insights from large-scale biological datasets: Our group develops and applies artificial intelligence … learning approaches to analyze large-scale biological datasets. This work helps uncover patterns and relationships in …
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Soil compartments (bulk soil, litter, root and rhizosphere) as main drivers of soil protistan communities distribution in forests with different nitrogen deposition
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