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Learning to Look
… a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to identify a … isolate and extract viruses,” said the study’s lead author Simon Roux, a JGI research scientist in the  Environmental …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein … soil health. The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint … retrieved using the  JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) data portal. The IMG suite is a …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and … mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. … led to the identification of a new family of Cas proteins, named Cas14. Using these sequences as a starting point, JGI …
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Informatics Advisory Committee
… effective management and strategic objectives for the JGI’s data science, informatics and information technology (IT) …
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Genome‐wide associations with flowering time in switchgrass using exome‐capture sequencing data
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The BioMart community portal: an innovative alternative to large, centralized data repositories
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acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
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Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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Combining Hadoop with MPI to Solve Metagenomics Problems that are both Data- and Compute-intensive
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iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology
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Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling
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