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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a …
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Leo Baumgart
… at the University of California, San Diego. As the Sequencing Technology Implementation Lead, he directs a … and plants. His team is also developing single-nuclei sequencing methods to characterize gene regulation at the … and Timothy J. Donohue. "Using DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… reference genome built off more than a decade of work; as sequencing technologies advanced, assembly and annotation of the genome sequence improved in …
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A Complex Confection Decoded: Sugarcane Reference Genome
… sugarcane was published as a step forward in this effort. Sequencing and assembling the genome required a custom pipeline and techniques. High quality primary assembly not only includes a full representation of the …
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Katherine Louie
… where she manages metabolomics production for community sequencing projects and heads R&D efforts to expand the … drive patterns in rhizosphere microbial community assembly. Nat Microbiol. 2018;3: 470–480. 7. Louie KB, Bowen … Education …
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Multiplex Editing of the Nucleoredoxin1 Tandem Array in Poplar: From Small Indels to Translocations and Complex Inversions
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JGI@25: Using Team Science to Build Communities Around Data
… “We currently have 19 genomes sequenced, 15 that are in sequencing or assembly right now, and eight more that we are likely to …
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Training the Next Generation of Talent
… in Wang’s group on developing an algorithm for RNA-Seq assembly. RNA-Seq is a technique for profiling the small … for building and maintaining cells through the use of deep-sequencing technologies. The internship program was born out … the opportunity to gain hands-on experience at a major sequencing center.” The third member of the internship …
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Short sequence motifs, overrepresented in mammalian conserved non-coding sequences
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Introduction: Sequences and consequences
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Targeted single‐cell sequencing
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JGIota: Looking Back at Sequencing for Soybeans
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